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AFAIK, SATA repartitioning is exactly the same as any other. The only difference I see is that they are considered scsi devices by Linux.

It's probably a SuSE thing. It's a good distribution if you get it working, but I've had no end of problems with it (mostly with nVidia drivers though). Have you tried using Knoppix to put a filesystem on the partitions? Or, failing that, using Knoppix itself to re-create the partitions? It could be that the Windows partitioner is doing a funky Windows thing that Knoppix will allow for (it being a nice guy an'all :) ) but SuSE not?